Stanford Neurodevelopment Affect and Pyschopathology Laboratory
About the dataset
Stanford (SNAP) cohort consists of first episode and recurrent MDD and healthy participants (Sacchet & Gotlib, 2017; Sacchet et al., 2019).
The study is part of the COORDINATE-MDD consortium. For more information, see: https://doi.org/10.1038/s44220-023-00187-w.
The study is part of the COORDINATE-MDD consortium. For more information, see: https://doi.org/10.1038/s44220-023-00187-w.
| Study | Stanford Neurodevelopment Affect and Pyschopathology Laboratory | |
|---|---|---|
| Data Descriptor Paper |
https://doi.org/10.1038/s41598-017-02062-y
https://doi.org/10.1016/j.jpsychires.2015.06.002 |
|
| DUA | Please contact Dr. Christos Davatzikos to obtain the DUA for the derived data and request an introduction to the study PI to obtain the DUA for the raw data. | |
| Country/Region | USA | |
| Disease Tag | depression | |
| Age (mean ± SD) | 32.6 ± 11.2 | |
| Age Range | 19-58 | |
| % Female | 64.5 | |
| CUBIC Project | /cbica/projects/MultisiteMD |
|
| PI for CUBIC Access Approval | Christos Davatzikos | |
| N Subjects | 110 | |
| N MR Sessions | 110 | |
|
DLMUSE
(110/110 complete) |
/cbica/projects/MultisiteMD/Pipelines/MultisiteMD_DLMUSE_2025/SNAP/Results/SNAP_DLMUSE_Volumes.csv
|
|
|
RAVENS
(DRAMMS-1.4.1)
(110/110 complete) |
/cbica/projects/MultisiteMD/Pipelines/CoordinateMD_3.5D_2020/Protocols/RAVENS/SNAP
|
|
|
fMRIPrep
(23.1.3)
(110/110 complete) |
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols
/opt/conda/envs/fmriprep/bin/fmriprep \
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Data/ \
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols/ \
participant \
--participant_label 2614 \
--fs-license-file /cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/license.txt \
--fs-no-reconall \
--use-syn-sdc warn \
--output-spaces MNI152NLin2009cAsym:res-2 \
--debug all
|
|
|
XCP-D
(0.7.1rc6)
(110/110 complete) |
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols/XCP
/usr/local/miniconda/bin/xcp_d \
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols/ \
/cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols/XCP/ \
participant \
--participant_label 2614 \
--input-type fmriprep \
-p 36P \
--work-dir /cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/Protocols/ \
--motion-filter-type lp \
--band-stop-min 6 \
--motion-filter-order 4 \
--despike \
--fd-thresh 0 \
--lower-bpf 0.01 \
--upper-bpf 0.08 \
--bpf-order 2 \
--head-radius auto \
--dummy-scans auto \
--min-coverage 0.5 \
--smoothing 0 \
--fs-license-file /cbica/projects/MultisiteMD/CoordinateMD_Studies/SNAP/Pipelines/SNAP_fMRI_2024/license.txt
|
|
| Non-Imaging Data |
Contact Mathilde Antoniades to request access to the non-imaging data. /cbica/home/harmang/for_others/final_combined_istaging_withMUSE.csv
Data consolidated and harmonized in 2026. This study: subset with |
Funding
This study was supported by NIMH grant MH59259 to Dr. Gotlib, a grant from the Gipuzkoako Foru Aldundia (Fellows Gipuzkoa Program) to Dr. Iglesias. The funding sources had no involvement in the study design; data collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication.