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Penn LINC Neuroinformatics
Welcome
Lab Basics
Onboarding
Lab Meetings
Project Meetings
Informatics Training
Birthdays
Talks and Seminars
Best practices for coding for scientific computing
Project Setup
Stages of a Project
Project Reproducibility Guide
Lab Noise, Communication, and Collaboration
Travel Guidelines
Data Use Agreements Tutorial
CONCUR Reimbursement SOP
Scheduling and Booking Rooms
Computation Basics
SSH Keys
python
Working on CUBIC/PMACS via Visual Code Studio
VPNs
Using screen
Documentation
Updating PennLINC.github.io
Project Documentation with GitHub Pages
Flywheel
Flywheel GUI
BIDS Curation
Flywheel SDK Theory
Getting Data from Flywheel
Running Analysis Gears
Uploading To Flywheel
Custom Info Uploader
Gear development
PMACS
CUBIC
Tutorials
Tutorial Template
Regional Quantification
Curating ASL Data
Creating BIDS Events TSVs from ITC EPrime Files
Surfaces and Ciftis
InDesign Tutorial
Common Methods
Generalized Additive Models
Gradients
Meta-analysis
Setup
Database Search
Abstract Screening
Full-text Screening
Data Extraction
ALE
Current Projects
Current Studies
Completed Projects & Studies
Using Containers
Data Workflows
Datalad
Data Cycle
Getting Static Data from PMACS
Available Static Datasets
Data Sharing
Archived Documentation
The Way
Fetching Your Data
Curating BIDS Datasets
Running Pipelines with DataLad
Collaboration & Sharing
CUBIC-flywheel
CUBIC-X11GUI
Edit on GitHub
This section provides walkthroughs on common tasks that involve data.
Table of contents
Datalad
Data Cycle
Getting Static Data from PMACS
Available Static Datasets
Data Sharing