Neuromaps
Neuromaps is a wonderful Python package that is both a data resource and an analytical toolbox. Here’s an overview of what it can be used for:
- Data resource: neuromaps includes a host of different cortical surface properties, such as maps of cortical thickness, functional networks, gene expression, myelin content, and many more.
- You could for instance use these maps to understand how your own dataset relates to known brain features.
- Transformations and Resampling: neuromaps includes tools to bring brain maps into a common space (like the MNI, fsaverage fslr).
- It also provides functions to align and resample maps across different parcellations and resolutions, whether they are in volume (3D) or surface (cortical surface) form.
- Assessing relationships between maps: It provides metrics for comparing maps, such as spatial correlation, which helps in quantifying the similarity between different brain maps.
- This includes various implementations of the spin test (see corresponding section for more details on that).
Here’s a link to neuromaps: https://netneurolab.github.io/neuromaps/usage.html