Completed Projects
Below is a list of completed projects and studies in the lab:
| Study Title | Lead Name(s) | Link |
|---|---|---|
| GluCEST Imaging of Reward Responsiveness | Valerie Sydnor | https://pennlinc.github.io/sydnor_glucest_rewardresponsiveness_2020/, published in Molecular Psychiatry |
| Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence | Marieta Pehlivanova | https://github.com/PennLINC/PehlivanovaEtAllScripts, published in Journal of Neuroscience |
| Quantitative assessment of structural image quality | Adon Rosen | https://github.com/PennLINC/RosenT1QA, published in Neuroimage |
| The impact of in-scanner head motion on structural connectivity derived from diffusion MRI | Graham Baum | https://github.com/PennLINC/baumDtiMotion, published in Neuroimage |
| FlywheelTools | Tinashe Tapera | https://github.com/PennLINC/FlywheelTools, published in Frontiers in Neuroinformatics |
| Evidence for Dissociable Linkage of Dimensions of Psychopathology to Brain Structure in Youths | Antonia Kaczkurkin | https://github.com/PennLINC/KaczkurkinPark_BifactorStructure, published in American Journal of Psychiatry |
| Accelerated cortical thinning within structural brain networks is associated with irritability in youth | Robert Jirsaraie | https://github.com/PennLINC/jirsaraieStructuralIrritability, published in Neuropsychopharmacology |
| Neurostructural Heterogeneity in Youths With Internalizing Symptoms | Antonia Kaczkurkin | https://github.com/PennLINC/KaczkurkinHeterogenInternalizing, published in Biological Psychiatry |
| Convergent neural representations of experimentally-induced acute pain in healthy volunteers: A large-scale fMRI meta-analysis | Anna Xu | https://github.com/PennLINC/Xu_PainHealthy, published in Neuroscience and Biobehavioral Reviews |
| Impact of puberty on the evolution of cerebral perfusion during adolescence | Theodore Satterthwaite | https://github.com/PennLINC/MeanCBF, published in PNAS |
| Neurocognitive and functional heterogeneity in depressed youth | Erica Baller | https://github.com/PennLINC/baller_heterogen_2019, published in Neuropsychopharmacology |
| Brain Responses to Noxious Stimuli in Patients With Chronic Pain A Systematic Review and Meta-analysis | Anna Xu | https://github.com/PennLINC/Xu_fMRIChronicPain, published in JAMA Network Open |
| QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data | Matt Cieslak | https://github.com/PennLINC/qsiprep_paper, published in Nature Methods |
| Mobile Footprinting: Linking Individual Distinctiveness in Mobility Patterns to Mood, Sleep, and Brain Functional Connectivity | Cedric Xia | https://github.com/PennLINC/footprinting, published in bioRxiv |
| Longitudinal Development of Brain Iron Is Linked to Cognition in Youth | Bart Larsen | https://github.com/PennLINC/Larsen_EI_Development, published in The Journal of Neuroscience |
| Developmental coupling of cerebral blood flow and fMRI fluctuations in youth | Erica Baller | https://github.com/PennLINC/IntermodalCoupling, published in bioRxiv |
| Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth | Zaixu Cui | https://github.com/PennLINC/pncsinglefuncparcel_psychopathology-1, published in Biological Psychiatry |
| ASLPrep: A Generalizable Platform for Processing of Arterial Spin Labeled MRI and Quantification of Regional Brain Perfusion | Azeez Adebimpe | https://github.com/PennLINC/aslprep_paper, published in bioRxiv |
| Neurodevelopment of the Association Cortices: Patterns, Mechanisms, and Implications for Psychopathology | Valerie Sydnor | https://pennlinc.github.io/S-A_ArchetypalAxis/, published in Neuron |
How to Add Your Study
If you’d like to add your study to this list, read on! Successful/complete documentation of your study requires two things:
- A Github Pages site, and
- An entry on this page
Github Pages Documentation
We use Github Pages to reproducibly document how we arrived at a scientific finding, usually for a paper or poster. A Github Pages site is a static website linked directly to a Github repository – for example, this website is a Github Pages site for the Github repository PennLINC/pennlinc.github.io. The underlying code is markdown and is rendered (converted) automatically into a website by Github. You’ll want to create one of these sites for your project and its code repository. To learn how to do this, see this tutorial.
Study Page Entry
Lastly, you’ll need to add your study to the list below. To add a study to this list, please first read the documentation guide to familiarize yourself with the process of adding content to this website. When it comes time to add your study, simply add a Pull Request with your entry in the raw text of table:
| Study Title | Lead Name(s) | Link |
| ------------- | ------------------ | --------------------------------- |
| Study 1 | Joe Bloggs | [My study 1](mystudy.github.io) |
| Study 2 | Jane Doe | [My study 2](study2.github.io) |
Simply add a new line, using the pipes | to delineate columns, and a newline to delineate rows — don’t forget to use correct markdown formatting for links: [title](url).
For additional information see the Project Setup Page.